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mvbutils - General utilities, workspace organization, code and doc editing, live package maintenance, etc

Hierarchical workspace tree, code editing and backup, easy package prep, editing of packages while loaded, per-object lazy-loading, easy documentation, macro functions, and miscellaneous utilities. Needed by various packages including debug, offarray, and kinference.

Last updated

6.53 score 22 dependents 127 scripts 639 downloads

debug - MVB's Debugger for R

Proper debugger for R functions and scripts, with code display, graceful error recovery, line-numbered conditional breakpoints, access to exit code, flow control, and full keyboard input.

Last updated

5.22 score 2 stars 1 dependents 5.5k scripts 1 downloads

atease - Easy access to attributes

Easy access to attributes using esnail (at)

Last updated

3.39 score 9 dependents 18 scripts

offarray - Arrays with non-1 offsets

Arrays with non-1 offsets

Last updated

cpp

3.35 score 5 dependents 30 scripts

offartmb - Use offarray code with RTMB

Helper functions to allow offarray code to work directly under RTMB

Last updated

2.92 score 1 dependents 14 scripts

gbasics - Genotype classes and support routines for CKMR

S3 classes for manipulating genetic data, primarily NGS SNPs (sequence counts and/or genotypes) but maybe more, plus support for other kin-finding/genotyping packages; ultimately meant for Close-Kin Mark-Recapture.

Last updated

2.65 score 3 dependents 2 scripts

vecless - Easy array/matrix ops

Algebraic-style array/matrix ops without vectorization, using named indices; a wrapper for the 'tensorA' package

Last updated

2.65 score 3 dependents 1 scripts

microscoping - Preliminary feasibility for CKMR

Rough-as-guts laugh-test design calculations for CKMR on fish

Last updated

2.18 score 1 dependents

despack - Helpers for CKMR design

Help to compute expected Hessian given a design (ie sample sizes) and your CKMR model

Last updated

2.18 score 1 dependents

deconvodisc - Discrete deconvolution via smoothers

Deconvolves count samples from unknown discrete distros subjected to known discrete convolution matrix

Last updated

cpp

2.18 score 1 dependents

gasplit - Flexible estimation of 2-category proportions

Like a GLM/GAM where the true category of each sample is unknown, but the response data is a continuous variable with known distributions for category-1 and category-2 samples.

Last updated

2.00 score

lyxport - LyX to MSWord etc

Tools for smooth Lyx export via pandoc, currently to MSWord but to potentially other formats

Last updated

cpp

1.70 score

nobcom - Turn off the byte-compiler

Import this package in order to turn off R's byte-compiler

Last updated

1.70 score

dumdum - Auto installer for kinference prereqs

Install this to get the other packages required by kinference from R-universe, in case kinference itself is not on R-universe yet. Contains one cynical function.

Last updated

1.70 score 3 scripts

TMBO - Code helpers for TMB

Arrays/vectors from index 1 (or any offset you choose, like package 'offarray'), names and dimnames, useful non-crashy error messages, plus simple for-loop aliases. Nicer than raw TMB!

Last updated

1.70 score 2 scripts

mvbjoblot - One-stop-shop installer

Installs all packages required for MVB CKMR course

Last updated

1.70 score 1 scripts